PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009765174.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 325aa    MW: 35892.9 Da    PI: 6.5539
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009765174.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.77e-4055115262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     +++++kcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s
  XP_009765174.1  55 HDHSIKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 115
                     57889*****************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3049109IPR003851Zinc finger, Dof-type
PfamPF027012.6E-3357113IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.03159113IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106197IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGITSLQVCM DSSDWLQDTI HEEGAAGIDS SSSPISEDII CSRPLIVERR LRPPHDHSIK  60
CPRCDSTHTK FCYYNNYSLS QPRYFCKTCR RYWTKGGTLR NIPVGGGCRK NKKVSSKKSN  120
IETANNQNPT DLQLSFPDQM LAFSHHHFMS SNNFGLGNHQ GNNFMLENPT AIDFMEGKYE  180
ALVGCTSSRN QDFLGNGDIG MISTPTGFGH DINSHGNIIA PNFAFGMATT MDAGNNFGTT  240
EMDSSHHHQR LMLSTYENNQ HEEQIINAVD VKPNPKILSL EWHDQVLGCS DAGKESFGYY  300
SSVGGLGSWT GLMNGYGSSA TNPLV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765174.10.0PREDICTED: dof zinc finger protein DOF5.6-like
RefseqXP_016451922.10.0PREDICTED: dof zinc finger protein DOF5.6-like
TrEMBLA0A0B6VJP11e-118A0A0B6VJP1_TOBAC; Dof zinc finger protein
TrEMBLA0A061FUJ41e-117A0A061FUJ4_THECC; F-box family protein isoform 2 (Fragment)
TrEMBLA0A061FV521e-117A0A061FV52_THECC; Dof-type zinc finger DNA-binding family protein isoform 1
STRINGPGSC0003DMT4000465981e-116(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48952240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.17e-54Dof family protein